PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00356.1.g00260.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 236aa    MW: 26305.5 Da    PI: 7.9662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00356.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32158216159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  Zpz_sc00356.1.g00260.1.am.mk 158 LDDGYRWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHT 216
                                   59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-34143216IPR003657WRKY domain
SuperFamilySSF1182909.94E-29150217IPR003657WRKY domain
PROSITE profilePS5081130.067153218IPR003657WRKY domain
SMARTSM007741.3E-37158217IPR003657WRKY domain
PfamPF031062.2E-25159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEGSSQLETC IPSLYGLSPC ASTPQLASLP NENKLLQMPL VHEQAGNHDV MLSSPDNHGG  60
NTYPLLLPGI PFCPTSAAPG DKPTGFATLD AIEVNDALQD MCYSGTDGGH LGNESRRRER  120
WWTGAPAPTA DKGRTMKVRR KMREPRFCFQ TKSDVDVLDD GYRWRKYGQK VVKNSLHPRS  180
YYRCTHSNCR VKKRVERLSE DCRMVITTYE GRHNHTRSDD GVDGTDHTGS CAFTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26149215874Probable WRKY transcription factor 4
2lex_A4e-26149215874Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654321e-110EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956420.11e-103PREDICTED: probable WRKY transcription factor 12
SwissprotQ93WY41e-56WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLK3ZWK31e-103K3ZWK3_SETIT; Uncharacterized protein
STRINGSi030985m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.17e-58WRKY family protein